| Accession: | |
|---|---|
| Functional site class: |   HP1 ligand  | 
    
| Functional site description: | Motif in proteins that interact with the chromoshadow domain of Heterochromatin-binding protein 1.  | 
    
| ELM Description: |   Motif is a ligand to an interface formed by dimerization of two chromoshadow domains in HP1 proteins.  | 
    
| Pattern: | P[MVLIRWY]V[MVLIAS][LM] | 
| Pattern Probability: | 0.0000338 | 
| Present in taxon: | Eukaryota | 
| Interaction Domain: | 
		 
		    
		    
		    
			Chromo_shadow (PF01393)
		    Chromo shadow domain
		    
		    (Stochiometry: 1 : 1) 
		     
		    
		 
   
        
        
            
            
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 HP1 is a nonhistone chromosomal protein primarily associated with heterochromatin. In mammals three variants exist: HP1 alpha, HP1 beta and HP1 gamma. All have an N-terminal chromodomain (SM00298) and a C-terminal chromoshadow domain (SM00300). The HP1 chromodomain can bind to metylated lysine 9 on histone H3, while the chromoshadow domain can mediate homo-dimerisation and interaction with other proteins. The PxVxL motif was identified as a HP1-binding motif by Smothers,2000). Several chromatin modifying proteins have been shown to interact with HP1 using this motif. Structural analysis has shown that the motif interacts with a chomoshadow domain dimer (Brasher,2000).   | 
(click table headers for sorting; Notes column: =Number of Switches, =Number of Interactions)
| Acc., Gene-, Name | Start | End | Subsequence | Logic | #Ev. | Organism | Notes | 
|---|---|---|---|---|---|---|---|
|  Q62318 Trim28 TIF1B_MOUSE  | 
    486 | 490 | SGLLRKVPRVSLERLDLDLT | TP | 4 | Mus musculus (House mouse) | |
|  Q13263 TRIM28 TIF1B_HUMAN  | 
    486 | 490 | SGLMRKVPRVSLERLDLDLT | TP | 6 | Homo sapiens (Human) | |
|  Q9QWF0 Chaf1a CAF1A_MOUSE  | 
    222 | 226 | LLFIEKVPVVVLEDILATKP | TP | 1 | Mus musculus (House mouse) | |
|  P20193 Su(var)3-7 SUV37_DROME  | 
    394 | 398 | PEDAQDTPVVMMNGDVDSGD | TP | 1 | Drosophila melanogaster (Fruit fly) | |
|  O00268 TAF4 TAF4_HUMAN  | 
    764 | 768 | QVTLTQTPMVALRQPHNRIM | TP | 1 | Homo sapiens (Human) | |
|  O15164 TRIM24 TIF1A_HUMAN  | 
    713 | 717 | ADSTHKVPVVMLEPIRIKQE | TP | 2 | Homo sapiens (Human) | |
|  Q9VI63 Alh Q9VI63_DROME  | 
    1051 | 1055 | AVPATTSPLVVLSNQLPLNS | TP | 2 | Drosophila melanogaster (Fruit fly) | |
|  P12956 XRCC6 XRCC6_HUMAN  | 
    352 | 356 | LMLMGFKPLVLLKKHHYLRP | TP | 2 | Homo sapiens (Human) | |
|  Q13111 CHAF1A CAF1A_HUMAN  | 
    238 | 242 | ILFKGKVPMVVLQDILAVRP | TP | 1 | Homo sapiens (Human) | 
    
        Please cite: 
            ELM-the Eukaryotic Linear Motif resource-2024 update.
        
    (PMID:37962385)
    
    
ELM data can be downloaded & distributed for non-commercial use according to the ELM Software License Agreement
ELM data can be downloaded & distributed for non-commercial use according to the ELM Software License Agreement
